Allen Institute
Pinned repositories
Brain Modeling Toolkit
Collaboration between BBP and AIBS
Community-contributed and experimental CellProfiler modules.
Python package providing mesoscale connectivity models for mouse.
Shared repo for EM connectomics and Array Tomography render based image processing modules
Python version of Khaled Khairy's EM_aligner, supporting distributed assembly and solve
multipatch_analysis
Forked from aiephys/multipatch_analysisAnalysis tools specific to the aiephys multipatch project.
render
Forked from saalfeldlab/renderRender transformed image tiles
a Python machine learning library for neurophysiology data
CellProfiler
Forked from CellProfiler/CellProfilerAn open-source application for biological image analysis
incubator-airflow
Forked from apache/incubator-airflowApache Airflow (Incubating)
This python module simplifies the development of modules that would like to define and check a particular set of input parameters, but be able to flexibly define those inputs in different ways in different contexts.
transformy
Forked from campagnola/transformyCoordinate system transformations
Allen Institute mouse eye tracker.
neuroanalysis
Forked from campagnola/neuroanalysisModular analysis tools for neurophysiology data
scikit-image
Forked from scikit-image/scikit-imageImage Processing SciKit (Toolbox for SciPy)
ccfviewer
Forked from campagnola/ccfviewerSimple application for viewing and slicing AI common coordinate framework atlas data
pycsf
Forked from campagnola/pycsfApplication / python module for creating and managing chemical solution recipes
Analysis code for Teeter et al 2018 Nature Communications Manuscript
The ZeroMQ XOP enables Igor Pro to interface over the network using a ZeroMQ messaging layer and JSON as message format
EM_aligner
Forked from khaledkhairy/EM_alignerA set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
Single cell transcriptomic data from Tasic, et al. (2016)