PASSION Lab

Repositories

• gpu-counting-filter

  Forked from Ericwimsatt/cqf

  A General-Purpose Counting Filter: Counting Quotient Filter
  Cuda BSD-3-Clause 23 0 0 0 Updated Jul 23, 2021

• BELLA

  BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper

  matrix-multiplication long-read read-aligners spgemm genome-alignment overlapper pacbio-aligner
  C++ 6 37 1 0 Updated Jul 21, 2021

• GraphLearning
  0 0 0 0 Updated Jul 16, 2021

• diBELLA.2D

  Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly

  genome hpc overlapping genome-assembly hpc-applications kmer-counting longread
  C++ 3 8 0 1 Updated Jul 15, 2021

• CombBLAS

  The Combinatorial BLAS (CombBLAS) is an extensible distributed-memory parallel graph library offering a small but powerful set of linear algebra primitives specifically targeting graph analytics.
  C++ 5 12 3 1 Updated Jul 9, 2021

• HUNTRESS

  Approximate reconstruction algorithm for matrices having false positives and false negatives
  Python 0 0 0 0 Updated Jun 21, 2021

• terrace

  Terrace: A Hierarchical Graph Container for Skewed Dynamic Graphs
  C++ BSD-3-Clause 0 5 0 0 Updated Jun 16, 2021

• metagnn
  Python 0 0 0 0 Updated Jun 15, 2021

• PASTIS

  Distributed Protein Sequence Aligner
  C++ 0 4 6 0 Updated May 6, 2021

• CAGNET
  Python 5 18 0 0 Updated Apr 22, 2021

• DEDUKT
  C++ 0 1 0 0 Updated Feb 26, 2021